what i'm doing rite now?

currently, i'm doing structure prediction on pha synthase of chromobacterium sp usm2..what i have done are:

1. multiple alignment of pha synthase from various bacteria..

2. secondary structure analysis for this protein..

3. structure prediction of this protein using iTASSER.

4. analysis of all the predicted models to get the best model..using procheck, and others.

5. analysis of hydrophobicity & hydrophilicity of the protein model.

6. i also did the prediction of binding sites of the protein and detect the amino acid at the predicted binding sites.


i will update my progress on the next entry...

bye..

p/s: need to study more on protein structure prediction & analysis coz not fully understand on this topic...