Sunday, August 15, 2010

MD result for 5 nano seconds

i already got MD result for 5 nano seconds last friday after 3 weeks waiting for it..this structure have minimum energy than the first one...

so, i analyze the structure using SAVES server (structural analysis and verification server).....

and below are the result from the analysis:

ramachandran plot:
  • residues in most favoured region : 65.7%
  • residues in additional allowed region : 29.9%
  • residues in generously allowed region : 2.4%
  • residues in dissallowed region : 2.0%
errat: 62.474

verify_3D: 67.25%

the result for verify_3D is better than the initial model because the initial model is only 49%.

the result for errat is lower than last one(90.502)

1 comment:

  1. Is it Stuctural Analysis and Verification Server?
    Just review about Ramachandra plot again...
    I think I need more time to understand it...

    Is all the favoured region, add, generously and disallowed region refering to the energy favouring position?

    What's the difference between Add, and Generously allowed region?

    Answer me when u r free la, thanks ya! =)

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